CIS for limited companies

A company paid under CIS gets it back through its payroll.

A sole trader claims CIS back on a tax return. A limited company does not: it sets the deductions against the PAYE and National Insurance it owes each month, through its payroll, and claims back what is left after the tax year ends. Here is how, from HMRC's guidance.

Through the payroll

Set against what the company owes HMRC each month.

The FPS, as usual

The company's Full Payment Submission goes in as normal, on or before each payday.

And an EPS with it

At the same time, send an Employer Payment Summary showing the CIS deductions taken off the company for the year to date. HMRC takes them off what you owe, and you pay the balance by the usual date.

Nothing to pay

If there are deductions left after paying your tax, carry them forward to the next period in the same tax year, and tell HMRC in the EPS that you have nothing to pay.

After the tax year

Claiming back what is left, and what not to do.

Claim a refund

Deductions still left over after the end of the tax year are claimed back from HMRC as a refund.

Not on the Corporation Tax return

Do not use the company's Corporation Tax return to pay tax with your CIS deductions. HMRC says you may get a penalty if you do.

Keep a record

Keep a record of the deductions used against each monthly or quarterly PAYE bill - form CIS132 is one way - and keep every payment and deduction statement from your contractors.

HMRC's guidance: Pay tax and claim back deductions. For a sole trader or partner it is the tax return instead - see CIS, both sides.

What Stoneledger does

A company's CIS, its payroll and its accounts, in one set of books.

  • Every deduction from its invoices and the statements that prove it, checked against what was paid.
  • Set against the payroll, month by month, with what is left to reclaim once the tax year ends worked out for you.
  • Kept apart from Corporation Tax, which it can never be claimed against. The company's tax and its accounts come from the same ledger.
A company's Corporation Tax screen: CIS withheld by contractors, the part set against PAYE and National Insurance, and what is left to reclaim after the year end
CIS taken off a company, set against its payroll · Limited company sample book

A company's CIS, payroll and accounts, from one ledger.

The deductions, the payroll they are set against, and the year's accounts, kept together so they always agree.

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